Nucleotide Sequences Submitted to GenBank

BANGOR BIODEGRADATION GROUP
SUBMITTED NUCLEOTIDE SEQUENCES

To access sequences, search Entrez at NCBI or go direct from the Accession number

AF036940
     21160 bp: Ralstonia (formerly Pseudomonas) sp. U2 plasmid pWWU2 putative chemotaxis protein gene,partial cds; LysR-like regular protein (nagR), ferredoxin reductase (nagAa), salicylate-5-hydroxylase large oxygenase component (nagG), salicylate-5-hydroxylase small oxygenase component (nagH), ferredoxin (nagAb), naphthalene 1,2 dioxygenase large oxygenase component (nagAc), naphthalene 1,2 dioxygenase small oxygenase component (nagAd), cis-naphthalene dihydrodiol dehydrogenase (nagB), salicylaldehyde dehydrogenase (nagF), 1,2-dihydroxynaphthalene dioxygenase (nagC), putative aldolase (nagQ), trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (nagE), 2-hydroxychromene carboxylate isomerase (nagD), glutathione-S-transferase-like protein (nagJ), gentisate 1,2-dioxygenase (nagI), fumarylpyruvate hydrolase (nagK), maleylpyruvate isomerase (nagL), nagM (nagM), and NagN (nagN) genes, complete cds; and putative transposase gene, partial cds.

AF043544
     14861 bp: Pseudomonas sp. TW3 putative transposase TnpA1* (tnpA1*), putative transposase TnpA2* (tnpA2*), NtnU (ntnU), putative alcohol dehydrogenase NtnW (ntnW), 4-nitrobenzaldehyde dehydrogenase NtnC (ntnC), 4-nitrotoluene monooxygenase hydroxylase component NtnMA (ntnM), and reductase component of 4-nitrotoluene monooxygenase NtnMA (ntnA) genes, complete cds; ntnB* pseudogene, partial sequence; 4-nitrobenzyl alcohol dehydrogenase NtnD (ntnD) gene, complete cds; aldH* pseudogene, complete sequence; putative transposase gene, complete cds; and unknown genes.

AF043925
     1611 bp: Pseudomonas putida TOL plasmid pWW102 2-oxopent-4-enoate hydratase (xylJ) and acetaldehyde dehydrogenase (xylQ) genes, complete cds; and  4-hydroxy-2-oxovalerate aldolase (xylK) gene, partial

AF077670
     1822 bp: Pseudomonas sp. IC plasmid pWW110 gene for putative regulatory protein (bphS), complete cds.

AF081362 (also part of AF036940 see above)
    2500 bp: Ralstonia (formerly Pseudomonas) sp. U2 plasmid pWWU2 genes for gentisate 1,2-dioxygenase (nagI), putative isomerase-decarboxylase homolog, and glutathione-S-transferase homologue, complete cds. Now assimilated as part of AF036940 (see above).

AF150928
     16768 bp: Acinetobacter sp. ADP1 genes for BenP, putative porin (benP), AreR, regulatory gene (areR), AreC, benzaldehyde dehydrogenase (areC), AreB, benzyl alcohol dehydrogenase (areB), AreA, benzyl esterase (areA), SalD, putative membrane bound facilitator of uptake (salD), SalE, alkyl salicylate esterase (salE), SalR, salicylate regulatory protein of LysR family (salR), SalA, salicylate hydroxylase (salA), ORF1, putative membrane protein of unknown function (orf1), ORF2, putative 2-component regulatory protein (orf2), ORF3, putative histidine kinase component of 2-component regulatory system (orf3), and ORF4, carbonic anhydrase homologue (orf4), complete cds; ORF5, dihydropyrimidinase homologue (orf5), partial cds. This entire sequence is linked but runs in the opposite direction to the entire ben-cat region to be found at AF009224

AF253412
    1411 bp:  Acidocella sp. WJB-3 16S ribosomal RNA gene, partial sequence.

AF253413
    1411 bp: Acidocella sp. LGS-3 16S ribosomal RNA gene, partial sequence.

AF292904
    5996 bp:  Pseudomonas putida PnbA (pnbA), PnbR (pnbR), and PnbB (pnbB) genes, complete cds; and unknown genes.

AF292094
    5996 bp:  Pseudomonas putida TW3 genes for 4-nitrobenzoate utilization.  PnbA, 4-nitrobenzoate reductase (pnbA), PnbR, regulator protein (pnbR), and PnbB, 4-hydroxylaminobenzoate lyase (pnbB) genes, complete cds; and unknown genes.

AF301897
    1453 bp: Ralstonia sp. U2 16S ribosomal RNA gene, partial sequence.

AJ344068
    116580 bp:   Pseudomonas putida plasmid pWW0 complete sequence.

AY128707
    3372 bp:    Insertion sequence ISPpu12 from catabolic plasmid pWW0  (found also as part of AJ344068, see above)

L02356
     1603 bp: Pseudomonas putida positive regulatory protein (xylR) gene, putative cds; positive regulatory protein (xylS1) gene, complete cds.

L02357
     1346 bp: Pseudomonas putida positive regulatory protein (xylS3) gene, complete cds.

L02358
     1679 bp: Pseudomonas putida positive regulatory protein (xylR) gene 5' end; positive regulatory protein (xylS1) gene, complete cds.

L02642
     1447 bp: TOL Plasmid pDK1 (Pseudomonas putida strain HS1) resolvase and xylS2 positive regulator genes, complete coding regions.

L02643
    1447 bp: Plasmid pWW53 (Pseudomonas putida strain MT53) resolvase and xylS2 positive regulator genes, complete coding regions.

L11583
    1760 bp: Pseudomonas putida mt-2 plasmid pWW0 isolate PaW1 putative protein  gene, complete cds.

L11585
    2057 bp: Pseudomonas putida mt-2 plasmid pWWO isolate PaW1 putative protein gene, complete cds.

U01825
     1241 bp:Pseudomonas sp. IC catechol 2,3-dioxygenase (bphE) gene, complete cds, and 2-hydroxymuconic semialdehyde dehydrogenase (bphG) gene, partial cds.

U01826
     1146 bp: Pseudomonas putida MT15 catechol 2,3-dioxygenase II (cdo) gene, complete cds.

U13232
     2180 bp: Pseudomonas putida NCIB9816 acetaldehyde dehydrogenase (nahO) and 4-hydroxy-2-oxovalerate aldolase (nahM) genes, complete cds, and  4-oxalocrotonate decarboxylase (nahK) and 2-oxopent-4-enoate hydratase (nahL) genes, partial cds.

U20269
     1734 bp: Pseudomonas putida toluene catabolism operon xylU and xylW genes, complete cds.

U87258
     4037 bp: Acinetobacter sp. ADP1 cis,cis-muconate transport protein MucK (mucK) and electron transfer flavoprotein-ubiquinone oxidoreductase homolog genes, complete cds.

 U89712
     6040 bp: Rhodococcus globerulus hpp operon, 3-(3-hydroxyphenyl) propionate hydroxylase (hppA), 2-hydroxy-6-ketonona-2,4-dienoate hydrolase (hppC),   2,3-dihydroxyphenylpropionate 1,2-dioxygenase (hppB), putative 3-(3-hydroxyphenyl) propionate transport protein (hppK) and putative regulatory  protein (hppR) genes, complete cds.

U89713
     1437 bp: Rhodococcus globerulus 16S ribosomal RNA gene, partial sequence.

Y07775
     408 bp: Pseudomonas putida TOL plasmid pWW53 xylYZLTEGFJQKIH promoter region (Pm1).

Y07776
     382 bp:Pseudomonas putida TOL plasmid pWW53 xylXYZLTEGFJQKIH promoter region (Pm2).

To access sequences, search Entrez at NCBI